Hmm, weird. It definitely isn't deprecated now, according to the docs[1] and I haven't seen anyone complain about ipairs recently ever since I learned the language ^^. But anyway, the only real downside about ipairs is efficiency so even if they removed it I would probably just add it back myself as a regular function.
[1] http://www.lua.org/manual/5.2/manual.html#pdf-ipairs